Source code for nxtomomill.io.utils

# coding: utf-8

"""
utils functions for io
"""
from __future__ import annotations

import logging
import re

from silx.utils.enum import Enum as _Enum

from nxtomomill.io.framegroup import FrameGroup

_logger = logging.getLogger(__name__)


__all__ = [
    "remove_parenthesis_or_brackets",
    "filter_str_def",
    "convert_str_to_tuple",
    "convert_str_to_bool",
    "is_url_path",
    "convert_str_to_frame_grp",
    "PathType",
]


[docs]def remove_parenthesis_or_brackets(input_str): if ( input_str.startswith("(") and input_str.endswith(")") or input_str.startswith("[") and input_str.endswith("]") ): input_str = input_str[1:-1] return input_str
[docs]def filter_str_def(elmt): if elmt is None: return None assert isinstance(elmt, str) elmt = elmt.lstrip(" ").rstrip(" ") for character in ("'", '"'): if elmt.startswith(character) and elmt.endswith(character): elmt = elmt[1:-1] return elmt
[docs]def convert_str_to_tuple(input_str: str, none_if_empty: bool = False) -> tuple | None: """ :param input_str: string to convert :param none_if_empty: if true and the conversion is an empty tuple return None instead of an empty tuple """ if isinstance(input_str, (list, set)): input_str = tuple(input_str) if isinstance(input_str, tuple): return input_str if input_str is None: input_str = "" if not isinstance(input_str, str): raise TypeError( f"input_str should be a string not {type(input_str)}, {input_str}" ) input_str = input_str.lstrip(" ").rstrip(" ") input_str = remove_parenthesis_or_brackets(input_str) elmts = input_str.split(",") elmts = [filter_str_def(elmt) for elmt in elmts] rm_empty_str = lambda a: a != "" elmts = list(filter(rm_empty_str, elmts)) if none_if_empty and len(elmts) == 0: return None else: return tuple(elmts)
[docs]def convert_str_to_bool(value: str | bool): if isinstance(value, bool): return value elif isinstance(value, str): if value not in ("False", "True", "1", "0"): raise ValueError("value should be 'True' or 'False'") return value in ("True", "1") else: raise TypeError("value should be a string")
[docs]def is_url_path(url_str: str) -> bool: """ :param url_str: url as a string :return: True if the provided string fit DataUrl pattern [scheme]:://[file_path]?[data_path] """ pattern_str_seq = "[a-zA-Z0-9]*" url_path_pattern = rf"{pattern_str_seq}\:\/\/{pattern_str_seq}" pattern = re.compile(url_path_pattern) return bool(re.match(pattern, url_str))
[docs]def convert_str_to_frame_grp(input_str: str) -> tuple: """ Convert a list such as: .. code-block:: text urls = ( (frame_type=dark, entry="silx:///file.h5?data_path=/dark", copy=True), (frame_type=flat, entry="silx:///file.h5?data_path=/flat"), (frame_type=projection, entry="silx:///file.h5?data_path=/flat"), (frame_type=projection, entry="silx:///file.h5?data_path=/flat"), ) to a list of InputUrl """ result = [] if not isinstance(input_str, str): raise TypeError("input_str should be an instance of str") # remove spaces at the beginning and at the end input_str = input_str.replace("\n", "") input_str = input_str.lstrip(" ").rstrip(" ") input_str = remove_parenthesis_or_brackets(input_str) # special case when the ")" is given in a line and ignored by configparser input_str = input_str.replace("((", "(") # split sub entries re_expr = r"\([^\)]*\)" frame_grp_str_list = re.findall(re_expr, input_str) for frame_grp_str in frame_grp_str_list: try: frame_grp = FrameGroup.frm_str(frame_grp_str) except Exception as e: _logger.error( f"Unable to create a valid entry from {frame_grp_str}. Error is {e}" ) else: result.append(frame_grp) return tuple(result)
[docs]class PathType(_Enum): ABSOLUTE = "absolute" RELATIVE = "relative"