nxtomomill.app.edf2nx_check#

Application to check the conversion done of an EDF folder to a .nx file.

usage: nxtomomill edf2nx-check [-h] [--dataset-basename DATASET_BASENAME]
                               [--info-file INFO_FILE] [--config CONFIG]
                               [--delete-edf] [--output-checks OUTPUT_CHECKS]
                               [scan_path] [output_file]

check a conversion from edf to NXtomo went's well

positional arguments:
  scan_path             folder containing the edf files
  output_file           foutput .h5 file

options:
  -h, --help            show this help message and exit
  --dataset-basename DATASET_BASENAME, --file-prefix DATASET_BASENAME
                        file prefix to be used to deduce projections
  --info-file INFO_FILE
                        .info file containing acquisition information
                        (ScanRange, Energy, TOMO_N...)
  --config CONFIG, --configuration-file CONFIG, --configuration CONFIG
                        file containing the full configuration to convert from
                        SPEC-EDF to bliss to nexus. Default configuration file
                        can be created from `nxtomomill edf-config` command
  --delete-edf, --delete-edf-source, --delete-edf-source-files
                        if you are duplicating data (default behavior) you can
                        ask to delete used edf files to free space
  --output-checks OUTPUT_CHECKS
                        Define list of check to be run once the conversion is
                        finished (raise an error if check fails). This is done
                        before removing edf if asked. So if check fails source
                        edf files won't be removed

Functions

main(argv)

check a conversion made.
Show Source