nxtomomill.app.fluo2nx#
Application to convert a fluo-tomo dataset, after PyMCA (https://www.silx.org/doc/PyMca/dev/index.html) fit, into an hdf5/nexus file.
usage: nxtomomill fluo2nx [-h] [--detectors [DETECTORS ...]]
[--dimension DIMENSION] [--info-file INFO_FILE]
[--config CONFIG] [--mode MODE]
scan_path output_file dataset_basename
Converts fluo-tomo data (after PyMca fit) to hdf5 - nexus compliant file
format.
positional arguments:
scan_path Path to the folder containing the raw data folder and
the fluofit/ subfolder.
output_file File produced by the converter. '.nx' extension
recommended.
dataset_basename In 2D, the exact full name of the folder. In 3D, the
folder name prefix (the program will search for
folders named <prefix>_projection_XXX where XXX is a
nmber.)
options:
-h, --help show this help message and exit
--detectors [DETECTORS ...]
Define a list of (real or virtual) detector names used
for the exp (space separated values - no comma). E.g.
'falcon xmap'. If not specified, all detectors are
processed.
--dimension DIMENSION
2 for 2D XRFCT, 3 for 3D XRFCT. Default is 3.
--info-file INFO_FILE
.info file containing acquisition information
(ScanRange, Energy, TOMO_N...)
--config CONFIG, --configuration-file CONFIG, --configuration CONFIG
file containing the full configuration to convert from
(PyMCA-computed) fluo projections to nexus. Default
configuration file can be created from `nxtomomill
fluo-config` command
--mode MODE What to do if file exists:- 'newfile': program will
fail if file already exists.- 'overwrite': program
will overwrite existing file or existing entries in
file.
Functions
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